iATC_Deep-mISF: A Multi-Label Classifier for Predicting the Classes of Anatomical Therapeutic Chemicals by Deep Learning
- 1 Computer Science, Jingdezhen Ceramic Institute, Jingdezhen, China
- 2 Gordon Life Science Institute, Boston, MA 02478, USA
Abstract
The recent worldwide spreading of pneumonia-causing virus, such as Coronavirus, COVID-19, and H1N1, has been endangering the life of human beings all around the world. To provide useful clues for developing antiviral drugs, information of anatomical therapeutic chemicals is vitally important. In view of this, a CNN based predictor called “iATC_Deep-mISF” has been developed. The predictor is particularly useful in dealing with the multi-label systems in which some chemicals may occur in two or more di fferent classes. To maximize the convenience for most experimental scientists, a user-friendly web-server for the new predictor has been established at http://www.jci-bioinfo.cn/iATC_Deep-mISF/ , which will become a very powerful tool for developing effective drugs to fight pandemic coronavirus and save the mankind of this planet.
- Maxwell, A., Li, R., Yang, B., Weng, H., Ou, A., Hong, H., Zhou, Z., Gong, P. and Zhang, C. (2017) Deep Learning Architectures for Multi-Label Classification of Intelligent Health Risk Prediction. BMC Bioinformatics, 18, 523. https://doi.org/10.1186/s12859-017-1898-z
- Khan, Z.U., Ali, F., Khan, I.A., Hussain, Y. and Pi, D. (2019) iRSpot-SPI: Deep Learning-Based Recombination Spots Prediction by Incorporating Secondary Sequence Information Coupled with Physio-Chemical Properties via Chou’s 5-Step Rule and Pseudo Components. Chemometrics and Intelligent Laboratory Systems (CHEMOLAB), 189, 169-180. https://doi.org/10.1016/j.chemolab.2019.05.003
- Chou, K.C. (2011) Some Remarks on Protein Attribute Prediction and Pseudo Amino Acid Composition (50th Anniversary Year Review, 5-Steps Rule). Journal of Theoretical Biology, 273, 236-247. https://doi.org/10.1016/j.jtbi.2010.12.024
- Jia, J., Liu, Z., Xiao, X., Liu, B. and Chou, K.C. (2016) iCar-PseCp: Identify Carbonylation Sites in Proteins by Monto Carlo Sampling and Incorporating Sequence Coupled Effects into General PseAAC. Oncotarget, 7, 34558-34570. https://doi.org/10.18632/oncotarget.9148
- Liu, B., Long, R. and Chou, K.C. (2016) iDHS-EL: Identifying DNase I Hypersensitive Sites by Fusing Three Different Modes of Pseudo Nucleotide Composition into an Ensemble Learning Framework. Bioinformatics, 32, 2411-2418. https://doi.org/10.1093/bioinformatics/btw186
- Cheng, X., Zhao, S.G., Xiao, X. and Chou, K.C. (2017) iATC-mISF: A Multi-Label Classifier for Predicting the Classes of Anatomical Therapeutic Chemicals. Bioinformatics, 33, 341-346. (Corrigendum, ibid., 2017, Vol. 33, 2610) https://doi.org/10.1093/bioinformatics/btx387
- Chou, K.C. (2013) Some Remarks on Predicting Multi-Label Attributes in Molecular Biosystems. Molecular Biosystems, 9, 1092-1100. https://doi.org/10.1039/c3mb25555g
- Song, J., Wang, Y., Li, F., Akutsu, T., Rawlings, N.D., Webb, G.I. and Chou, K.C. (2018) iProt-Sub: A Comprehensive Package for Accurately Mapping and Predicting Protease-Specific Substrates and Cleavage Sites. Brief in Bioinform, 20, 638-658. https://doi.org/10.1093/bib/bby028
- Zhang, M., Li, F., Marquez-Lago, T.T., Leier, A., Fan, C., Kwoh, C.K., Chou, K.C., Song, J. and Jia, C. (2019) MULTiPly: A Novel Multi-Layer Predictor for Discovering General and Specific Types of Promoters. Bioinformatics, 35, 2957-2965. https://doi.org/10.1093/bioinformatics/btz016
- Huang, C. and Yuan, J. (2013) Using Radial Basis Function on the General Form of Chou’s Pseudo Amino Acid Composition and PSSM to Predict Subcellular Locations of Proteins with Both Single and Multiple Sites. Biosystems, 113, 50-57. https://doi.org/10.1016/j.biosystems.2013.04.005