Senescence process and oxidative stresses induce changes in plant genomic DNA quality
- 1 Research & Production Complex, Pasteur Institute of Iran, Tehran, Iran
- 2 Department of Agronomy and Plant Breeding, College of Aburaihan, University of Tehran, Pakdasht, Iran
- 3 Research & Production Complex, Pasteur Institute of Iran, Tehran, Iran
- 4
Abstract
Senescence or programmed cell death is a process that interacts with many biochemical and physiological changes in living organism and is generally induced by aging. Many environmental stresses that accelerate the production of activated oxygen can also induce senescence artificially. One of the important aspects of senescence is possibly degradation of macromolecules such as DNA. It is believed that the ran dom amplification of polymorphic DNA (RAPD) technique is a good method to compare the DNA quality of juvenile and senescence samples in which oxidative stress is induced. In this study, juvenile, senescence and plant paraquat treated leaves from tomato, tobacco and rose, as well as juvenile and senescence human tissues were processed for DNA extraction followed by RAPD technique. We discovered that plant and human genomes are influenced by senescence and environmental stresses underwent genome diversity. Using some molecular markers proved that senescence and oxidative treated samples show different DNA pattern compare to the juvenile-un- treated samples. We also concluded that RAPD technique can be used as a useful tool in genomics study to provide researchers reliable information of DNA quality and can effectively help to resolve the environment condition.
- Arora, S.K., Wolfgang, M.C., Lory, S. and Ramphal, R.J. (2004) Sequence polymorphism in the glycosylation island and flagellins of Pseudomonas aeruginosa. Bacteriology, 186, 2115-2122.
- Williams, J.G., Kubelik, A.R., Livak, K.J., Rafalski, J.A. and Tingey, S.V. (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research, 18, 6531-6535.
- Torezan J.M.D., Souza R.F.D., Ruas P.M., Ruas C.D., Camargo E.H and Vanzela A.L.L. (2005) Genetic variability of pre and post-fragmentation cohorts of Aspidosperma polyneuron Muell. Arg. (Apocynaceae). Brazilian Archives of Biology and Technology, 48, 171-180.
- Atienzar, F.A. and Jha, A.N. (2006) The random amplified polymorphic DNA (RAPD) assay and related techniques applied to genotoxicity and carcinogenesis studies: A critical review. Mutation Research/Reviews in Mutation Research, 613, 76-102. doi:10.1016/j.mrrev.2006.06.001
- Corich, V., Mattiazzi, A., Soldati, E., Carraro, A. and Giacomini, A. (2005) Sau-PCR, a Novel Amplification Technique for Genetic Fingerprinting of Microorganisms. Applied and Environmental Microbiology, 71, 6401-6406. doi:10.1128/AEM.71.10.6401-6406.2005
- Siwoski, A., Ishkanian, A., Garnis, C., Zhang, L., Rosin, M. and Lam, W.L. (2002) An efficient method for the assessment of DNA quality of archival microdissected specimens. Modern Pathology, 15, 889-892. doi:10.1097/01.MP.0000024288.63070.4F
- Liu, C., Bai, B., Skogerb?, G., Cai, L., Deng, W., Zhang, Y., Bu, D., Zhao, Y. and Chen, R. (2005) NONCODE: An integrated knowledge database of non-coding RNAs. Nucleic Acids Research, 33, D112-D115.
- Ranjan, R., Marczewski, A., Chojnacki, T., Hertel, J. and Swiezewska, E. (2001) Search for polyprenols in leaves of evergreen and deciduous Ericaceae plants. Acta Biochimica Polonica, 48, 579-584.
- Khanna-Chopra, R. (2012) Leaf senescence and abiotic stresses share reactive oxygen species-mediated chloroplast degradation. Protoplasma, 249, 469-481. doi:10.1007/s00709-011-0308-z
- Donahue, J.L., Okpodu, C.M., Cramer, C.L., Grabau, E.A. and Alscher, R.G. (1997) Responses of antioxidants to paraquat in pea leaves (relationships to resistance). Plant Physiology, 113, 249-257.
- Shaaltiel, Y. and Gressel, J. (1987) Evidence that paraquat transiently inhibits leaf chloroplast reactions in resistant plants. Plant Physiology, 85, 869-871. doi:10.1104/pp.85.4.869