Further Insights on the <i>Datura innoxia</i> Hyoscyamine 6<i>β</i>-Hydroxylase (DiH6H) Based on Biochemical Characterization and Molecular Modeling — Oak Academic Publishing
Research ArticleOpen AccessGoogle Scholar indexed
Further Insights on the <i>Datura innoxia</i> Hyoscyamine 6<i>β</i>-Hydroxylase (DiH6H) Based on Biochemical Characterization and Molecular Modeling
Department of Evolutionary & Environmental Biology, University of Haifa, Haifa, Israel
,
Institute of Plant Sciences, Agriculture Research Organization, RishonLe Zion, Israel
,
Department of Vegetable Crops Newe Ya’ar Research Center, Agricultural Research Organization, Ramat Yishay, Israel
,
Lilienblum 3, Gedera, Israel
,
Department of Vegetable Crops Newe Ya’ar Research Center, Agricultural Research Organization, Ramat Yishay, Israel
,
Department of Vegetable Crops Newe Ya’ar Research Center, Agricultural Research Organization, Ramat Yishay, Israel
,
Institute of Plant Sciences, Agriculture Research Organization, RishonLe Zion, Israel
,
Department of Vegetable Crops Newe Ya’ar Research Center, Agricultural Research Organization, Ramat Yishay, Israel
,
Department of Evolutionary & Environmental Biology, University of Haifa, Haifa, Israel
,
Department of Vegetable Crops, The Robert Smith Faculty of Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
1 Department of Evolutionary & Environmental Biology, University of Haifa, Haifa, Israel
2 Institute of Plant Sciences, Agriculture Research Organization, RishonLe Zion, Israel
3 Department of Vegetable Crops Newe Ya’ar Research Center, Agricultural Research Organization, Ramat Yishay, Israel
4 Lilienblum 3, Gedera, Israel
5 Department of Vegetable Crops Newe Ya’ar Research Center, Agricultural Research Organization, Ramat Yishay, Israel
6 Department of Vegetable Crops Newe Ya’ar Research Center, Agricultural Research Organization, Ramat Yishay, Israel
7 Institute of Plant Sciences, Agriculture Research Organization, RishonLe Zion, Israel
8 Department of Vegetable Crops Newe Ya’ar Research Center, Agricultural Research Organization, Ramat Yishay, Israel
9 Department of Evolutionary & Environmental Biology, University of Haifa, Haifa, Israel
10 Department of Vegetable Crops, The Robert Smith Faculty of Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
Hyoscyamine, anisodamine and scopolamine are tropane alkaloids present in some Solanaceae species and used in modern medicine. L-Hyoscyamine is hydroxylated to 6 β -hydroxyhyoscyamine (anisodamine) and then epoxidated to scopolamine by the dual action of hyoscyamine 6 β -hydroxylase (H6H), a 2-o xoglutarate dependent dioxygenase. A natural mutation in the Gly-220 residue to Cys was previously shown to be associated with the loss of function of H6H in Mandragora officinarum , preventing the accumulation of anisodamin e and scopolamine in these plants. We show here that a deliberate Gly220Cys mutation in the Datura innoxia DiH6H protein caused a loss of both its enzymatic abilities and rendered it unable to hydroxylate L-hyoscyamine into anisodamine and to epoxidate anisodamine into scopolamine. By using protein modeling based on an available crystal structure of H6H from Datura metel , we show how the Cys220 residue causes a steric interference in the active site cavity impairing the interaction of both substrates, hyoscyamine and anisodamine with the active site of the protein . We also address the enantiomeric preference of DiH6H based on molecular modeling.
Dewick, P.M. (2002) Alkaloids. In: Medicinal Natural Products: A Biosynthetic Approach, 2nd Edition, John Wiley & Sons, London, 292-302.
Elrod, K. and Buccafusco, J.J. (1988) An Evaluation of the Mechanism of Scopolamine-Induced Impairment in Two Passive Avoidance Protocols. Pharmacology, Biochemistry and Behavior, 29, 15-21. https://doi.org/10.1016/0091-3057(88)90267-5
Ullrich, S.F., Hagels, H. and Kayser, O. (2017) Scopolamine: A Journey from the Field to Clinics. Phytochemistry Reviews, 16, 333-353. https://doi.org/10.1007/s11101-016-9477-x
Matsuda, J., Okabe, S., Hashimoto, T. and Yamada, Y. (1991) Molecular Cloning of Hyoscyamine 6β-Hydroxylase, a 2-Oxoglutarate-Dependent Dioxygenase, from Cultured Roots of Hyoscyamus niger. Journal of Biological Chemistry, 266, 9460-9464. https://doi.org/10.1016/S0021-9258(18)92843-7
Kai, G., Liu, Y., Wang, X., Yang, S., Fu, X., Luo, X. and Liao, P. (2011) Functional Identification of Hyoscyamine 6β-Hydroxylase from Anisodus acutangulus and Overproduction of Scopolamine in Genetically-Engineered Escherichia coli. Biotechnology Letters, 33, 1361-1365. https://doi.org/10.1007/s10529-011-0575-y
Wang, X., Chen, M., Yang, C., Liu, X., Zhang, L., Lan, X., Tang, K. and Liao, Z. (2011) Enhancing the Scopolamine Production in Transgenic Plants of Atropa belladonna by Overexpressing Pmt and H6h Genes. Physiologia Plantarum, 143, 309-315. https://doi.org/10.1111/j.1399-3054.2011.01506.x
Kang, Y.M., Park, D.J., Min, J.Y., Song, H.J., Jeong, M.J., Kim, Y.D., Kang, S.M., Karigar, C.S. and Choi, M.S. (2011) Enhanced Production of Tropane Alkaloids in Transgenic Scopolia parviflora Hairy Root Cultures Over-Expressing Putrescine N-Methyl Transferase (PMT) and Hyoscyamine-6beta-Hydroxylase (H6H). In Vitro Cellular and Developmental Biology—Plant, 47, 516-524. https://doi.org/10.1007/s11627-011-9367-2
Yang, C., Chen, M., Zeng, L., Zhang, L., Liu, X., Lan, X., Tang, K. and Liao, Z. (2011) Improvement of Tropane Alkaloids Production in Hairy Root Cultures of Atropa belladonna by Overexpressing Pmt and H6h Genes. Plant OMICS Journal, 4, 29-33. https://doi.org/10.1111/j.1399-3054.2011.01506.x
Kai, G., Zhang, A., Guo, Y., Li, L., Cui, L., Luo, X., Liu, C. and Xiao, J. (2012) Enhancing the Production of Tropane Alkaloids in Transgenic Anisodus Acutangulus Hairy Root Cultures by Over-Expressing Tropinone Reductase i and Hyoscyamine-6β-Hydroxylase. Molecular BioSystems, 8, 2883-2890. https://doi.org/10.1039/c2mb25208b
Hashimoto, T. and Yamada, Y. (1986) Hyoscyamine 6β-Hydroxylase, a 2-Oxoglutarate-Dependent Dioxygenase, in Alkaloid-Producing Root Cultures. Plant Physiology, 81, 619-625. https://doi.org/10.1104/pp.81.2.619
Schlesinger, D., Davidovich Rikanati, R., Volis, S., Faigenboim, A., Vendramin, V., Cattonaro, F., Hooper, M., Oren, E., Taylor, M., Sitrit, Y., Inbar, M. and Lewinsohn, E. (2019) Alkaloid Chemodiversity in Mandragora Spp. Is Associated with Loss-of-Functionality of MoH6H, a Hyoscyamine 6β-Hydroxylase Gene. Plant Science, 283, 301-310. https://doi.org/10.1016/j.plantsci.2019.03.013
Kluza, A., Wojdyla, Z., Mrugala, B., Kurpiewska, K., Porebski, P.J., Niedzialkowska, E., Minor, W., Weiss, M.S., Borowski, T., Wojdyla, Z., Mrugala, B., Kurpiewska, K., Porebski, P.J., Niedzialkowska, E., Minor, W., Weiss, M.S. and Borowski, T. (2020) Regioselectivity of Hyoscyamine 6β-Hydroxylase-Catalysed Hydroxylation as Revealed by High-Resolution Structural Information and QM/MM Calculations. Dalton Transactions, 49, 4454-4469. https://doi.org/10.1039/D0DT00302F
Grabherr, M.G., Haas, B.J., Yassour, M., Levin, J.Z., Thompson, D.A., Amit, I., Adiconis, X., Fan, L., Raychowdhury, R., Zeng, Q., Chen, Z., Mauceli, E., Hacohen, N., Gnirke, A., Rhind, N., di Palma, F., Birren, B.W., Nusbaum, C., Lindblad-Toh, K., Friedman, N. and Regev, A. (2011) Trinity: Reconstructing a Full-Length Transcriptome without a Genome from RNA-Seq Data. Nature Biotechnology, 29, 644-652. https://doi.org/10.1038/nbt.1883
Bolger, A.M., Lohse, M. and Usadel, B. (2014) Trimmomatic: A Flexible Trimmer for Illumina Sequence Data. Bioinformatics, 30, 2114-2120. https://doi.org/10.1093/bioinformatics/btu170
Li, Q., Zhu, T., Zhang, R., Bu, Q., Yin, J., Zhang, L. and Chen, W. (2020) Molecular Cloning and Functional Analysis of Hyoscyamine 6β-Hydroxylase (H6H) in the Poisonous and Medicinal Plant Datura innoxia Mill. Plant Physiology and Biochemistry, 153, 11-19. https://doi.org/10.1016/j.plaphy.2020.04.021
Waterhouse, A., Bertoni, M., Bienert, S., Studer, G., Tauriello, G., Gumienny, R., Heer, F.T., de Beer, T.A.P., Rempfer, C. and Bordoli, L. (2018) SWISS-MODEL: Homology Modelling of Protein Structures and Complexes. Nucleic Acids Research, 46, W296-W303. https://doi.org/10.1093/nar/gky427
Morris, G.M., Huey, R., Lindstrom, W., Sanner, M.F., Belew, R.K., Goodsell, D.S. and Olson, A.J. (2009) AutoDock4 and AutoDockTools4: Automated Docking with Selective Receptor Flexibility. Journal of Computational Chemistry, 30, 2785-2791. https://doi.org/10.1002/jcc.21256
Wallace, A.C., Laskowski, R.A. and Thornton, J.M. (1995) LIGPLOT: A Program to Generate Schematic Diagrams of Protein-Ligand Interactions. Protein Engineering, Design and Selection, 8, 127-134. https://doi.org/10.1093/protein/8.2.127
Schrodinger, L.L.C. (2017) The PyMOL Molecular Graphics System.
Wu, T., Zhu, J.X., Wei, Q., Li, P., Wang, L.B., Huang, J., Wang, J.H., Tang, L.K., Wu, L.J., Li, C. and Han, W.N. (2019) Preparative Separation of Four Isomers of Synthetic Anisodamine by HPLC and Diastereomer Crystallization. Chirality, 31, 11-20. https://doi.org/10.1002/chir.23026
Hashimoto, T., Matsuda, J. and Yamada, Y. (1993) Two-Step Epoxidation of Hyoscyamine to Scopolamine Is Catalyzed by Bifunctional Hyoscyamine 6β-Hydroxylase. FEBS Letters, 329, 35-39. https://doi.org/10.1016/0014-5793(93)80187-Y
Liu, T., Zhu, P., Cheng, K., Meng, C. and He, H.-X. (2005) Molecular Cloning, Expression and Characterization of Hyoscyamine 6β-Hydroxylase from Hairy Roots of Anisodus tanguticus. Planta Medica, 71, 249-253. https://doi.org/10.1055/s-2005-837825
Fischer, C., Kwon, M., Ro, D.-K.K., van Belkum, M.J. and Vederas, J.C. (2018) Isolation, Expression and Biochemical Characterization of Recombinant Hyoscyamine-6β-Hydroxylase from: Brugmansia sanguinea-Tuning the Scopolamine Production. MedChemComm, 9, 888-892. https://doi.org/10.1039/C8MD00090E
Pramod, K.K., Singh, S. and Jayabaskaran, C. (2010) Biochemical and Structural Characterization of Recombinant Hyoscyamine 6beta-Hydroxylase from Datura metel L. Plant Physiology and Biochemistry, 48, 966-970. https://doi.org/10.1016/j.plaphy.2010.09.003
Li, J., van Belkum, M.J. and Vederas, J.C. (2012) Functional Characterization of Recombinant Hyoscyamine 6β-Hydroxylase from Atropa belladonna. Bioorganic & Medicinal Chemistry, 20, 4356-4363. https://doi.org/10.1016/j.bmc.2012.05.042
Farrow, S.C. and Facchini, P.J. (2014) Functional Diversity of 2-Oxoglutarate/Fe(II)-Dependent Dioxygenases in Plant Metabolism. Frontiers in Plant Science, 5, 1-15. https://doi.org/10.3389/fpls.2014.00524
Matsuda, J., Hashimoto, T. and Yamada, Y. (1997) Analysis of Active-Site Residues in Hyoiscyamin 6β-Hydroxylase. Plant Biotechnology, 14, 51-57. https://doi.org/10.5511/plantbiotechnology.14.51
Aravind, L. and Koonin, E.V. (2001) The DNA-Repair Protein AlkB, EGL-9, and Leprecan Define New Families of 2-Oxoglutarate- and Iron-Dependent Dioxygenases. Genome Biology, 2, research0007.1-0007.8. https://doi.org/10.1186/gb-2001-2-3-research0007
Martinez, S. and Hausinger, R.P. (2015) Catalytic Mechanisms of Fe(II)- and 2-Oxoglutarate-Dependent Oxygenases. Journal of Biological Chemistry, 290, 20702-20711. https://doi.org/10.1074/jbc.R115.648691