Cotton (Gossypium spp.) is the most important natural fiber in the world, and its seeds are also used as a food source. Breeding cotton for traits of interest, such as production and processing of fibers, will ensure that this natural product is as competitive as renewable synthetic fibers derived from petroleum. Thus, the mapping of the cotton genome for traits of interest may be the basis for its subsequent use in breeding programs. This work consists of a literature review, with the aim of bringing together works from different research groups working with the mapping of the cotton genome with molecular markers.
KeywordsCotton GenomeGenetic MapGossypiumMolecular MarkersQuantitative Trait Loci
Griffiths, A.J.F., Wessler, S.R., Carroll, S.B. and Doebley, J. (2013) Introdução à Genética. In: Mapeamento de cromossomos eucarióticos por recombinação, Rio de Janeiro, 109-150.
Ulloa, M., Saha, S., Jenkins, J.N., Meredith Jr., W.R., McCarty Jr., J.C. and Stelly, D.M. (2005) Chromosomal Assignment of RFLP Linkage Groups Harboring Important QTLs on an Intraspecific Cotton (Gossypium hirsutum L.) Joinmap. Journal of Heredith, 96, 132-144. http://www.researchgate.net/publication/8112954_Chromosomal_assignment_of_RFLP _linkage_groups_harboring_important_QTLs_on_an_intraspecific_cotton_(Gossypium_hirsutum_ L.)_Joinmap http://dx.doi.org/10.1093/jhered/esi020
Kalivas, A., Xanthopoulos, F., Kehagia, O. and Tsaftaris, A.S. (2011) Agronomic Characterization, Genetic Diversity and Association Analysis of Cotton Cultivars Using Simple Sequence Repeat Molecular Markers. Genetics and Molecular Research, 10, 208-217. http://www.researchgate.net/publication/49855243_Agronomic_characterization_genetic_diversity _and_association_analysis_of_cotton_cultivars_using_simple_sequence_repeat_molecular_markers http://dx.doi.org/10.4238/vol10-1gmr998
Zhang, Y., Lin, Z., Li, W., Tu, L., Nie, Y. and Zhang, X. (2007) Studies of New EST-SSRs Derived from Gossypium barbadense. Chinese Science Bulletin, 51, 2522-2531. http://link.springer.com/article/10.1007%2Fs11434-007-0399-2 http://dx.doi.org/10.1007/s11434-007-0399-2
FAO. FAOSTAT. http://faostat3.fao.org
Souza, V.C., Lorenzi, H. and Neto, A.C.R. (2008) Botanica Sistemática-guia ilustrado para a identificação de famílias de Fanerógamas nativas e exóticas do Brasil em APG II. Nova Odessa.
Judd, W.S., Campbell, C.S., Kellogg, E.A., Stevens, P.F. and Donoghu, M.J. (2009) Sistemática Vegetal—Um Enfoque Filogenético. Artmed, Porto Alegre.
Wendel, J. and Cronn, R. (2003) Polyploidy and the Evolutionary History of Cotton. Advances in Agronomy, 78, 139-186. http://www.sciencedirect.com/science/article/pii/S0065211302780048 http://dx.doi.org/10.1016/S0065-2113(02)78004-8
Freire, E.C., Morello, C.L., Farias, F.J.C., Silva Filho, J.L., Vidal Neto, F.C., Pedroza, M.B., Suinaga, F.A., Costa, J.N. and Andrade, F.P. (2008) O Agronegócio do algodão no Brasil. In: Beltrão, N.E.M. and Azevedo, D.M.P., Eds., Objetivos e métodos usados nos programas de melhoramento do algodão, Brasília, 299-323.
Duran, C., Edwards, D. and Batley, J. (2009) Molecular Genetic Markers: Discovery, Applications, Data Storage and Visualization. Current Bioinformatics, 4, 16-27. http://www.ingentaconnect.com/content/ben/cbio/2009/00000004/00000001/art00003 http://dx.doi.org/10.2174/157489309787158198
Wang, C., Guo, W., Cai, C. and Zhang, T. (2006) Characterization, Development and Exploitation of EST-Derived Microsatellites in Gossypium raimondii Ulbrich. Chinese Science Bulletin, 51, 557-561. http://link.springer.com/article/10.1007/s11434-006-0557-y http://dx.doi.org/10.1007/s11434-006-0557-y
Wu, R., Hou, W., Cui, Y., Li, H., Liu, T., Wu, S., Ma, C.X. and Zeng, Y. (2007) Modeling the Genetic Architecture of Complex Traits with Molecular Markers. Recent Patents on Nanotechnology, 1, 41-49. http://www.researchgate.net/publication/23656894_Modeling_the_genetic_architecture_of_complex _traits_with_molecular_markers http://dx.doi.org/10.2174/187221007779814835
Liu, R., Wang, B., Guo, W., Wang, L. and Zhang, T. (2011) Differential Gene Expression and Associated QTL Mapping for Cotton Yield Based on a cDNA-AFLP Transcriptome Map in an Immortalized F2. Theoretical and Applied Genetics, 123, 439-454. http://www.readcube.com/articles/10.1007/s00122-011-1597-5
Reinisch, A.J., Dong, J., Brubaker, C.L., Stelly, D.M., Wendel, J.F. and Paterson, A.H. (1994) A Detailed RFLP Map of Cotton, Gossypium hirsutum × Gossypium barbadense: Chromosome Organization and Evolution in a Disomic Polyploid Genome. Genetics, 138, 829-847. http://www.ncbi.nlm.nih.gov/pubmed/7851778
Bandyopadhyay, T. (2011) Molecular Marker Technology in Genetic Improvement of Tea. International Journal of Plant Breeding and Genetic, 5, 23-33. http://scialert.net/abstract/?doi=ijpbg.2011.23.33
Chee, P., Draye, X., Jiang, C.X., Decanini, L., Delmonte, T.A., Bredhauer, R., Smith, C.W. and Paterson, A.H. (2005) Molecular Dissection of Interspecific Variation between Gossypium hirsutum and Gossypium barbadense (Cotton) by a Backcross-Self Approach: I. Fiber Elongation. Theoretical and Applied Genetics, 111, 757-763. http://www.researchgate.net/publication/7759641_Molecular _dissection_of_interspecific_variation_between_Gossypium_hirsutum_and_ Gossypium_barbadense_%28cotton%29_by_a_backcross-self_approach_I._Fiber_elongation http://dx.doi.org/10.1007/s00122-005-2063-z
Xu, Z., Kohel, R.J., Song, G., Cho, J., Yu, J., Yu, S., Tomkins, J. and Yu, J.Z. (2008) An Integrated Genetic and Physical Map of Homoeologous Chromosomes 12 and 26 in Upland Cotton (G. hirsutum L.). BMC Genomics, 9, 1-11. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2270834
Gutiérrez, O.A., Stelly, D.M., Saha, S., Jenkins, J.N., McCarty Jr., J.C., Raska, D.A. and Scheffler, B.E. (2009) Integrative Placement and Orientation of Non-Redundant SSR Loci in Cotton Linkage Groups by Deficiency Analysis. Molecular Breeding, 23, 693-707. http://naldc.nal.usda.gov/naldc/download.xhtml?id=44255&content=PDF http://dx.doi.org/10.1007/s11032-009-9266-y
Myers, G.O., Jiang, B., Akash, M.W., Badigannavar, A. and Saha, S. (2009) Chromosomal Assignment of AFLP Markers in Upland Cotton (Gossypium hirsutum L.). Euphytica, 165, 391-399. http://download.springer.com/static/pdf/261/art%253A10.1007%252Fs10681-008 -9803-5.pdf?auth66=1404326130_7978e1ba27bcfabafb49f9e861931537&ext=.pdf http://dx.doi.org/10.1007/s10681-008-9803-5
Wang, X.Q., Feng, C.H., Lin, C.X. and Zhang, X.L. (2011) Genetic Diversity of Sea-Island Cotton (Gossypium barbadense) Revealed by Mapped SSRs. Genetics and Molecular Research, 10, 3620-3631. http://www.ncbi.nlm.nih.gov/pubmed/22183945 http://dx.doi.org/10.4238/2011.December.8.5
Byers, R.B., Harker, D.B., Yourstone, S.M., Maughan, P.J. and Udall, J.A. (2012) Development and Mapping of SNP Assays in Allotetraploid Cotton. Theoretical and Applied Genetics, 124, 1201-1214. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3324690 http://dx.doi.org/10.1007/s00122-011-1780-8
Wang, Z., Zhang, D., Wang, X., Tan, X., Guo, H. and Paterson, A.H. (2013) A Whole-Genome DNA Marker Map for Cotton Based on the D-Genome Sequence of Gossypium raimondii L. G3 (Bethesda), 3, 1759-1767. http://www.ncbi.nlm.nih.gov/pubmed/23979945 http://dx.doi.org/10.1534/g3.113.006890
Hoffmann, L.V. (2004) Mapeamento Molecular dos genes de resistência do patógeno azul do algodoeiro. Embrapa Algodão, Campina Grande, 1-31.
Gutiérrez, O.A., Robinson, A.F., Jenkins, J.N., McCarty, J.C., Wubben, M.J., Callahan, F.E. and Nichols, R.L. (2011) Identification of QTL Regions and SSR Markers Associated with Resistance to Reniform Nematode in Gossypium barbadense L. Accession GB713. Theoretical and Applied Genetics, 122, 271-280. http://link.springer.com/article/10.1007/s00122-010-1442-2 http://dx.doi.org/10.1007/s00122-010-1442-2
Romano, G.B., Sacks, E.J., Stetina, S.R., Robinson, A.F., Fang, D.D., Gutierrez, O.A. and ScheZer, J.A. (2009) Identification and Genomic Location of a Reniform Nematode (Rotylenchulus reniformis) Resistance Locus (Renari) Introgressed from Gossypium aridum into Upland Cotton (G. hirsutum). Theoretical and Applied Genetics, 120, 139-150. http://www.researchgate.net/publication/38012800_Identification_and_genomic _location_of_a_reniform_nematode_(Rotylenchulus_reniformis)_resistance_locus _(Ren_ari)_introgressed_from_Gossypium_aridum_into_upland_cotton_(G._hirsutum) http://dx.doi.org/10.1007/s00122-009-1165-4
Wang, P., Su, L., Qin, L., Hu, B., Guo, W. and Zhang, T. (2009) Identification and Molecular Mapping of a Fusarium wilt Resistant Gene in Upland Cotton. Theoretical and Applied Genetics, 119, 733-739. http://www.researchgate.net/publication/26276529_Identification_and_ molecular_mapping_of_a_Fusarium_wilt_resistant_ gene_in_upland_cotton http://dx.doi.org/10.1007/s00122-009-1084-4
Fang, H., Zhou, H., Sanogo, S. and Zhang, J. (2014) Quantitative Trait Locus Analysis of Verticillium Wilt Resistance in an Introgressed Recombinant Inbred Population of Upland Cotton. Molecular Breeding, 33, 709-720. http://link.springer.com/article/10.1007/s11032-013-9987-9 http://dx.doi.org/10.1007/s11032-013-9987-9
Zhao, Y., Wang, H., Chen, W. and Li, Y. (2014) Genetic Structure, Linkage Disequilibrium and Association Mapping of Verticillium Wilt Resistance in Elite Cotton (Gossypium hirsutum L.) Germplasm Population. PloS ONE, 9, 1-15. http://www.plosone.org/article/fetchObject.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone. 0086308&representation=PDF
Ashokkumar, K. and Ravikesavan, R. (2011) Conventional and Molecular Breeding Approaches for Seed Oil and Seed Protein Content Improvement in Cotton. International Research Journal of Plant Science, 2, 37-45. http://interesjournals.org/irjps/february-2011-vol-2-issue-2/conventional-and-molecular-breeding -approaches-for-seed-oil-and-seed-protein-content-improvement-in-cotton
Zhang, Z.S., Xiao, Y.H., Luo, M., Li, X.B., Luo, X.Y., Hou, L., Li, D.M. and Pei, Y. (2005) Construction of a Genetic Linkage Map and QTL Analysis of Fiber-Related Traits in Upland Cotton (Gossypium hirsutum L.). Euphytica, 144, 91-99. http://dx.doi.org/10.1007/s10681-005-4629-x http://link.springer.com/article/10.1007/s10681-005-4629-x
Shen, X., Guo, W., Lu, Q., Zhu, X., Yuan, Y. and Zhang, T. (2007) Genetic Mapping of Quantitative Trait Loci for Fiber Quality and Yield Trait by RIL Approach in Upland Cotton. Euphytica, 155, 371-380. http://wenku.baidu.com/view/47bf090f76c66137ee061948.html http://dx.doi.org/10.1007/s10681-006-9338-6
Pang, M., Percy, R.G., Hughs, E. and Zhang, J. (2009) Promoter Anchored Amplified Polymorphism Based on Random Amplified Polymorphic DNA (PAAP-RAPD) in Cotton. Euphytica, 167, 281-291. http://www.researchgate.net/publication/43280607_Promoter_anchored_ amplified_polymorphism_based_on_random_amplified_polymorphic_DNA_(PAAP-RAPD)_in_cotton http://dx.doi.org/10.1007/s10681-008-9850-y
Rakshit, A., Rakshit, S., Singh, J., Chopra, S.K., Balyan, H.S., Gupta, P.K. and Bhat, S.R. (2010) Association of AFLP and SSR Markers with Agronomic and Fibre Quality Traits in Gossypium hirsutum L. Journal of Genetics, 89, 155-162. http://link.springer.com/article/10.1007%2Fs12041-010-0055-5 http://dx.doi.org/10.1007/s12041-010-0055-5
Song, X. and Zhang, T. (2009) Quantitative Trait Loci Controlling Plant Architectural Traits in Cotton. Plant Science, 177, 317-323. http://dx.doi.org/10.1016/j.plantsci.2009.05.015 http://www.researchgate.net/publication/222547453_Quantitative_trait_loci_controlling_plant_ architectural_traits_in_cotton
Liu, R., Wang, B., Guo, W., Qin, Y., Wang, L., Zhang, Y. and Zhang, T. (2011) Quantitative Trait Loci Mapping for Yield and Its Components by Using Two Immortalized Populations of a Heterotic Hybrid in Gossypium hirsutum L. Molecular Breeding, 29, 297-311. http://www.readcube.com/articles/10.1007/s11032-011-9547-0?locale=en http://dx.doi.org/10.1007/s11032-011-9547-0
Liang, Q.Z., Hu, C., Hua, H., Li, Z. and Hua, J. (2013) Construction of a Linkage Map and QTL Mapping for Fiber Quality Traits in Upland Cotton (Gossypium hirsutum L.). Chinese Science Bulletin, 58, 3233-3243. http://link.springer.com/article/10.1007%2Fs11434-013-5807-1#page-1 http://dx.doi.org/10.1007/s11434-013-5807-1
Wang, X.Q., Yu, Y., Li, W., Guo, H., Lin, Z. and Zhang, X.L. (2013) Association Analysis of Yield and Fiber Quality Traits in Gossypium barbadense with SSRs and SRAPs. Genetics and Molecular Research, 12, 3353-3362. http://www.ncbi.nlm.nih.gov/pubmed/24065676 http://dx.doi.org/10.4238/2013.September.4.1
Cao, Z., Wang, P., Zhu, X., Chen, H. and Zhang, T. (2014) SSR Marker-Assisted Improvement of Fiber Qualities in Gossypium hirsutum Using G. barbadense Introgression Lines. TAG: Theoretical and Applied Genetics, 127, 587-594. http://dx.doi.org/10.1007/s00122-013-2241-3