Nowadays, brain function evaluation using Functional Near Infrared Spectroscopy ( fNIRS ) is one of the most potential non-invasive monitoring techniques. This paper concerns usefulness of the NIRS signals denoising using the Hemodynamic Evoked Response ( HomER ) as graphical user interface displays the NIRS data, fast independent component analysis ( FASTICA ) method to reduce data dimension and the combined Wavelet & PCA method for enhancing NIRS signals. NIRS signals include many types of noise, spread across a broad spectrum of frequencies, such as: low frequency noise from respiratory interference, 0.1 - 0.3 Hz, Mayer wave, about 0.1 Hz, cardiac interference, 0.8 - 2.0 Hz, and other artifacts from head and facial motions. Meanwhile, electronic components generate high frequency noise. Multi-resolution wavelet and PCA was applied successfully to enhance the NIRS signals. It consists of adaptively modifying the wavelet coefficients based on the degree of noise contamination of the processed NIRS signal. This is done subsequently to the signal pre-processing by reducing data dimension using the FASTICA method. We demonstrate, using signal-to-noise ratio and correlation indicators, that the technique used is superior to the wavelet and moving average filter and outperforms the proposed denoising NIRS signal.
KeywordsfNIRS<i>FASTICA</i>PCAWavelet
Ertelt, D., et al. (2007) Action Observation Has a Positive Impact on Rehabilitation of Motor Deficits after Stroke. NeuroImage, 36, 164-173. http://dx.doi.org/10.1016/j.neuroimage.2007.03.043
De. Vries, S. and Mulder, T. (2007) Motor Imagery and Stroke Rehabilitation: A Critical Discussion. Journal of Rehabilitation Medicine, 37, 5-13. http://dx.doi.org/10.2340/16501977-0020
Coyle, S., et al. (2004) On the Suitability of Near-Infrared (NIR) Systems for Next-Generation Brain-Computer Interfaces. Physiological Measurement, 25, 815-822. http://dx.doi.org/10.1088/0967-3334/25/4/003
Jöbsis, F.F. (1977) Noninvasive, Infrared Monitoring of Cerebral and Myocardial Oxygen Sufficiency and Circulatory Parameters. Science, 198, 1264-1267. http://dx.doi.org/10.1126/science.929199
Ferrari, M., Binzoni, T. and Quaresima, V. (1997) Oxidative Metabolism in Muscle. Philosophical Transactions of the Royal Society B, 352, 677-683. http://dx.doi.org/10.1098/rstb.1997.0049
Gratton, G. and Corballis, P.M. (1995) Removing the Heart from the Brain: Compensation for the Pulse Artifact in the Photon Migration Signal. Psychophysiology, 32, 292-299. http://dx.doi.org/10.1111/j.1469-8986.1995.tb02958.x
Morren, G., et al. (2004) Detection of Fast Neuronal Signals in the Motor Cortex from Functional near Infrared Spectroscopy Measurements Using Independent Component Analysis. Medical & Biological Engineering & Computing, 42, 92-99. http://dx.doi.org/10.1007/BF02351016
Victor, S., Jonatan, L. and Miroslav, V. (2013) Adaptive Filter Support Selection for Signal Denoising Based on the Improved ICI Rule. Digital Signal Processing, 23, 65-74. http://dx.doi.org/10.1016/j.dsp.2012.06.014
Izzetoglu, M., et al. (2005) Motion Artifact Cancellation in NIR Spectroscopy Using Wiener Filtering. IEEE Transactions on Biomedical Engineering, 52, 934-938. http://dx.doi.org/10.1109/TBME.2005.845243
Quan, Z., et al. (2009) Adaptive Filtering to Reduce Global Interference in Non-Invasive NIRS Measures of Brain Activation: How Well and When Does It Work? Neuroimage, 45, 788-794. http://dx.doi.org/10.1016/j.neuroimage.2008.12.048
Robertson, F.C., Douglas, T.S. and Meintjes, E.M. (2010) Motion Artifact Removal for Functional Near-Infrared Spectroscopy: A Comparison of Methods. IEEE Transactions on Biomedical Engineering, 57, 1377-1387. http://dx.doi.org/10.1109/TBME.2009.2038667
Hiroki, S., et al. (2006) Within-Subject Reproducibility of Near-Infrared Spectroscopy Signals in Sensorimotor Activation after 6 Months. Journal of Biomedical Optics, 11, 14-21.
Molaviet, B. and Dumont, G.A. (2012) Wavelet-Based Motion Artifact Removal for Functional Near-Infrared Spectroscopy. Physiological Measurement, 33, 259-270. http://dx.doi.org/10.1088/0967-3334/33/2/259
Jang, K.E., et al. (2009) Wavelet Minimum Description Length Detrending for Near-Infrared Spectroscopy. Journal of Biomedical Optics, 14, 1-13. http://dx.doi.org/10.1117/1.3127204
Strangman, G., Franceschini, M.A. and Boas, D.A. (2003) Factors Affecting the Accuracy of Near-Infrared Spectroscopy Concentration Calculations for Focal Changes in Oxygenation Parameters. Neuroimage, 18, 865-879. http://dx.doi.org/10.1016/S1053-8119(03)00021-1
Maryam, A. and Hamidreza, A. (2013) Statistical Modeling and Denoising Wigner-Ville Distribution. Digital Signal Processing, 23, 506-513. http://dx.doi.org/10.1016/j.dsp.2012.08.016
Izzetoglu, M., et al. (2010) Motion Artifact Cancellation in NIR Spectroscopy Using Discrete Kalman Filtering. Biomedical Engineering Online, 9, 16. http://dx.doi.org/10.1186/1475-925X-9-16
Behnam, M. and Guy, A.D. (2012) Wavelet-Based Motion Arti-fact Removal for Functional Near-Infrared Spectroscopy. Physiological Measurement, 33, 259-270. http://dx.doi.org/10.1088/0967-3334/33/2/259
Engreitz, J., et al. (2010) Independent Component Analysis: Mining Microarray Data for Fundamental Human Gene Expression Modules. Journal of Biomedical Informatics, 43, 932-944. http://dx.doi.org/10.1016/j.jbi.2010.07.001
Hyvarinen, A. and Oja, E. (2000) Independent Component Analysis: Algorithm and Applications. Neural Networks, 13, 411-430. http://dx.doi.org/10.1016/S0893-6080(00)00026-5
Langlois, D., Chartier, S. and Gosselin, D. (2010) An Introduction to Independent Component Analysis: InfoMax and FastICA Algorithm. Tutorials in Quantitative Methods for Psychology, 6, 31-38.
Toivianen, M., Corona, F., Paaso, J. and Teppola, P. (2010) Blind Source Separation in Diffuse Reflectance NIR Spectroscopy Using Independent Component Analysis. Journal of Chemometrics, 24, 514-522. http://dx.doi.org/10.1002/cem.1316
Himberg, J., Hyvärinen, A. and Esposito, F. (2010) Validating the Independent Components of Neuroimaging Time Series via Clustering and Visualization. NeuroImage, 22, 1214-1222. http://dx.doi.org/10.1016/j.neuroimage.2004.03.027
Tomé, A.M., Teixeira, A.R., Lang, E.W., Stadlthanner, K., Rocha, A.P. and Almeida, R. (2005) dAMUSE—A New Tool for Denoising and Blind Source Separation. Digital Signal Processing, 15, 400-421. http://dx.doi.org/10.1016/j.dsp.2005.01.004
Aminghafari, M., Cheze, N. and Poggi, J.M. (2006) Multivariate Denoising Using Wavelets and Principal Component Analysis. Computational Statistics & Data Analysis, 50, 2381-2398. http://dx.doi.org/10.1016/j.csda.2004.12.010
Bakshi, B. (1996) Multiscale PCA with Application to MSPC Monitoring. AIChE Journal, 44, 1596-1610. http://dx.doi.org/10.1002/aic.690440712
Elise, M., Truntzer, C., Cardot, H. and Ducoroy, P. (2010) Multivariate Denoising Methods Combining Wavelets and Principal Component Analysis for Mass Spectrometry Data. PROTEOMICS, 10, 2564-2572. http://dx.doi.org/10.1002/pmic.200900185
Yang, R.G. and Ren, M.W. (2011) Wavelet Denoising Using Principal Component Analysis. Expert Systems with Applications-ESWA, 38, 1073-1076.
Zima, M., Tichavsky, P., Paul, K. and Krajca, V. (2012) Robust Removal of Short-Duration Artifacts in Long Neonatal EEG Recordings Using Wavelet-Enhanced ICA and Adaptive Combining of Tentative Reconstructions. Physiological Measurement, 33, N39-N49. http://dx.doi.org/10.1088/0967-3334/33/8/N39
Rebeca, R., Vélez-Pérez, H., Ranta, R., Louis Dorr, V., Maquin, D. and Maillard, L. (2012) Blind Source Separation, Wavelet Denoising and Discriminant Analysis for EEG Artefacts and Noise Cancelling. Biomedical Signal Processing and Control, 7, 389-400. http://dx.doi.org/10.1016/j.bspc.2011.06.005
Mathworks (2012) Matlab Software. R2012a Version.
Chaddad, A., et al. (2012) Optical Receiver Front-End Intended for a Detector of Near Infrared Spectroscopy System. Journal of Sensor Networks, 2, 24-31.
Chaddad, A., Kamrani, E., Le Lan, J. and Sawan, M. (2013) Denoising fNIRS Signals to Enhance Brain Imaging Diagnosis. 29th Southern Biomedical Engineering Conference, Miami, 3-5 May 2013, 33-34.