A Personalized Adverse Drug Reaction Early Warning Method Based on Contextual Ontology and Rules Learning
- 1 School of Chinese-German Institute for Applied Engineering, Zhejiang University of Science and Technology, Hangzhou, China
- 2 School of Statistics and Mathematics, Zhongnan University of Economics and Law, Wuhan, China
Abstract
Background: The fatality of adverse drug reactions (ADR) has become one of the major causes of the non-natural disease deaths globally, with the issue of drug safety emerging as a common topic of concern. Objective: The personalized ADR early warning method, based on contextual ontology and rule learning, proposed in this study aims to provide a reference method for personalized health and medical information services. Methods: First, the patient data is formalized, and the user contextual ontology is constructed, reflecting the characteristics of the patient population. The concept of ontology rule learning is then proposed, which is to mine the rules contained in the data set through machine learning to improve the efficiency and scientificity of ontology rule generation. Based on the contextual ontology of ADR, the high-level context information is identified and predicted by means of reasoning, so the occurrence of the specific adverse reaction in patients from different populations is extracted. Results: Finally, using diabetes drugs as an example, contextual information is identified and predicted through reasoning, to mine the occurrence of specific adverse reactions in different patient populations, and realize personalized medication decision-making and early warning of ADR.
- Goetz, L.H. and Schork, N.J. (2018) Personalized Medicine: Motivation, Challenges, and Progress. Fertility & Sterility, 109, 952-963. https://doi.org/10.1016/j.fertnstert.2018.05.006
- Ye, B.C. (2000) Pharmacogenomics Design of Personalized Medicines. Journal of Chinese Biotechnology, 20, 53-57.
- Yu, Y. (2016) Adverse Drug Reaction Knowledge Integration and Application Research Based on Big Data Mining. PhD Dissertation, Jilin University, Changchun.
- Freifeld, C.C., Brownstein, J.S., Menone, C.M., et al. (2014) Digital Drug Safety Surveillance: Monitoring Pharmaceutical Products in Twitter. Drug Safety, 37, 343-350. https://doi.org/10.1007/s40264-014-0155-x
- Van Grootheest, K., de Graaf, L., de Jong-van, et al. (2013) Consumer Adverse Drug Reaction Reporting—A New Step in Pharmacovigilance. Drug Safety, 26, 211-217. https://doi.org/10.2165/00002018-200326040-00001
- Yan, P., Chen, H. and Zeng, D. (2008) Syndromic Surveillance Systems. Annual Review of Information Science & Technology, 42, 425-495. https://doi.org/10.1002/aris.2008.1440420117
- Leaman, R., Wojtulewicz, L., Sullivan, R., et al. (2010) Towards Internet-Age Pharmacovigilance: Extracting Adverse Drug Reactions from User Posts to Health-Related Social Networks. Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, Uppsala, 15 July 2010, 117-125.
- de Langen, J., van Hunsel, F., Passier, A., et al. (2008) Adverse Drug Reaction Reporting by Patients in the Netherlands—Three Years of Experience. Drug Safety, 31, 515-524. https://doi.org/10.2165/00002018-200831060-00006
- Gu, J.Z. (2009) Context Aware Computing. Journal of East China Normal University, No. 5, 1-20.
- Liang, S.X. and Li, F.L. (2014) Status Quo of Context-Aware Health Information Service System and Its Prospects. Chinese Journal of Medical Library and Information Science, 23, 31-36.
- Farion, K., Michalowski, W., Wilk, S., et al. (2009) Clinical Decision Support System for Point of Care Use: Ontology-Driven Design and Software Implementation. Methods of Information in Medicine, 4, 381-390. https://doi.org/10.3414/ME0574
- Andrej, M., Pierre, J., Olivier, D., et al. (2015) Ontology for Assessment Studies of Human Computer Interaction in Surgery. Artificial Intelligence in Medicine, 63, 73-84. https://doi.org/10.1016/j.artmed.2014.12.011
- Lei, H., Sow, D.M., Davis, I., et al. (2002) The Design and Applications of a Context Service. ACM Sigmobile Mobile Computing and Communications Review, 6, 45-55. https://doi.org/10.1145/643550.643554