Effect of the Continuum Removal in Predicting Soil Organic Carbon with Near Infrared Spectroscopy (NIRS) in the Senegal Sahelian Soils — Oak Academic Publishing
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Effect of the Continuum Removal in Predicting Soil Organic Carbon with Near Infrared Spectroscopy (NIRS) in the Senegal Sahelian Soils
UFR de Sciences Agronomiques, de l’Aquaculture et de Technologies Alimentaires, Université Gaston Berger, Saint-Louis, Sénégal
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UFR de Sciences Agronomiques, de l’Aquaculture et de Technologies Alimentaires, Université Gaston Berger, Saint-Louis, Sénégal
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Institut Sénégalais de Recherches Agricoles, Laboratoire LNRPV, Dakar, Sénégal
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IESOL Laboratoire Mixte International Ecologique des Sols Cultivés en Afrique de l’Ouest, Centre ISRA/IRD, Dakar, Sénégal
1 UFR de Sciences Agronomiques, de l’Aquaculture et de Technologies Alimentaires, Université Gaston Berger, Saint-Louis, Sénégal
2 UFR de Sciences Agronomiques, de l’Aquaculture et de Technologies Alimentaires, Université Gaston Berger, Saint-Louis, Sénégal
3 Institut Sénégalais de Recherches Agricoles, Laboratoire LNRPV, Dakar, Sénégal
4 IESOL Laboratoire Mixte International Ecologique des Sols Cultivés en Afrique de l’Ouest, Centre ISRA/IRD, Dakar, Sénégal
Spectroscopy plays a major role in the access of the analytical parameters of the soil. It tends to substitute the conventional laboratory analysis because hyperspectral data were least expensive and easier to obtain. The objective of this study was to evaluate the effect of the continuum removal (CR) in the validation of the accurate prediction model of the soil properties with Vis-NIR spectroscopy data. Few studies using Vis-NIR reflectance spectroscopy have well focused the calculation of the CR method; its effect in the calibration of the accurate models was also not well emphasized. In this study, we used the remote sensing software ENVI 4.7 to compute the CR function where the value of the continuum for each sample and for each spectral wavelength was obtained by dividing the reflectance values of the full spectrum (FS) with those of the continuum curve (CC). The partial least square regression (PLSR) model was applied in the spectral data from the soil of the Senegal Sahelian region. It was calibrated with both data from the full spectrum (FS) and those obtained after the application of the continuum removal. With the application of the CR, ultraviolet wavelengths (350 - 429 nm) and those of near infrared (2491 - 2500 nm) were removed from the explanatory variables of PLSR model. With the FS, all wavelengths between 350 and 2500 nm were taken into account in predicting soil properties. Our findings show a positive effect of the application of CR in the estimation of soil organic carbon. In calibration, the R2 increased up to 10% with the continuum removal in the model of 12 components (CP). In terms of validation, it’s the 15-component model which is the most accurate with the same range in calibration between the FS and the CR. The lowest RMSE ranged from 0.04 with the FS to 0.03 with the application of the CR in calibration and validation. These results show that the interest of this study as soil organic carbon is recognized as a key indicator of fertility of the soil in Sahelian-African regions. For future studies, it’s important to apply the model of neural networks to better evaluate the effect of continuum removal in predicting soil properties from the spectral data and other methods of preprocessing like the multiplicative scatter correction (msc).
KeywordsNIRSSoil ProprietiesContinuum RemovalPLSR ModelSenegal River Delta
Gomez, C., Lagacherie, P. and Couloum, G. (2008) Continuum Removal versus PLSR Method for Clay and Calcium Carbonate Content Estimation from Laboratory and Airborne Hyperspectral Measurements. Geoderma, 148, 141-148.
Viscarra Rossel, R.A., Walvoort, D.J.J., McBratney, A.B., Janik, L.J. and Skjemstad, J.O. (2006) Visible, Near Infrared, Mid Infrared or Combined Diffuse Reflectance Spectroscopy for Simultaneous Assessment of Various Soil Properties. Geoderma, 131, 59-75. http://dx.doi.org/10.1016/j.geoderma.2005.03.007
Dunn, B.W., Beecher, H.G., Batten, G.D. and Ciavarella, S. (2002) The Potential of Near-Infrared Reflectance Spectroscopy for Soil Analysis—A Case Study from the Reiverine Plain of South-Eastern Australia. Australian Journal of Experimental Agriculture, 42, 607-614. http://dx.doi.org/10.1071/EA01172
Diack, M. and Loum, M. (2014) Caractérisation par approche géostatistique de la variabilité des propriétés du sol de la ferme agropastorale de l’Université Gaston Berger (UGB) de Saint-Louis, dans le Bas delta du fleuve Sénégal. Revue Leidi, 12, 1-15.
Janik, L.J., Forrester, S.T. and Rawson, A. (2009) The Prediction of Soil Chemical and Physical Properties from Mid-Infrared Spectroscopy and Combined Partial Least-Squares Regression and Neural Networks (PLS-NN) Analysis. Chemometrics and Intelligent Laboratory Systems, 97, 179-188.
Feller, C. (1995) La matière organique du sol: Un indicateur de la fertilité. Application aux zones sahélienne et soudanienne. Agriculture & Développement, 8, 35-41.
Pieri, C. (1989) Fertilité des terres : bilan de trente ans de recherche et de développement agricole au sud du Sahara. Ministère de la coopération francaise, CIRAD-IRAT, 444 p.
FAO (2009) Le défi spécifique à l’Afrique subsaharienne. Comment nourrir le monde en 2050. Forum d’Experts de Haut Niveau Rome, 4 p.
FAO (2004) Carbon Sequestration in Dryland Soils. Rome, 109 p.
Brown, D.J., Shepherd, K.D., Walsh, M.G., Maysc, D.M. and Reinsch, T.G. (2006) Global Soil Characterization with VNIR Diffuse Reflectance Spectroscopy. Geoderma, 132, 273-290. http://dx.doi.org/10.1016/j.geoderma.2005.04.025
Chang, C.W., Laird, D.A., Mausbach, M.J. and Hurburgh, C.R. (2001) Near-Infrared Reflectance Spectroscopy—Principal Components Regression Analyses of Soil Properties Soil Science. Society American Journal, 65, 480-490.
Islam, K., Singh, B. and McBratney, A. (2003) Simultaneous Estimation of Several Soil Properties by Ultra-Violet, Visible and Near Infrared Reflectance Spectroscopy. Australian Journal of Soil Research, 41, 1101-1114.
Mouazen, A.M., Kuang, B., Baerdemaeker, J.D. and Ramon, H. (2010) Comparison among Principal Component Partial Least Squares and Back Propagation Neural Network Analyses for Accuracy of Measurement of Selected Soil Properties with Visible and Near Infrared Spectroscopy. Geoderma, 158, 23-31.
Viscarra Rossel, R.A. and Behrens, T. (2010) Using Data Mining to Model and Interpret Soil Diffuse Reflectance Spectra. Geoderma, 158, 46-54.
Zornoza, R., Guerrero, C., Mataix-Solera, J., Scow, K.M., Arcenegui, V. and Mataix-Beneyto, J. (2008) Near Infrared Spectroscopy for Determination of Various Physical, Chemical and Biochemical Properties in Mediterranean Soils. Soil Biology & Biochemistry, 40, 1923-1930. http://dx.doi.org/10.1016/j.soilbio.2008.04.003
Nocita, M., Stevens, A., Wesemael, B., van Aitkenhead, M., Bachmann, M., Barthes, B., Ben Dor, E., Brown, D.J., Clairotte, M., Csorba, A., Dardenne, P., Demattê, J.A.M., Genoty, V., Guerrero, C., Knadel, M., Montanarella, L., Noonx, C., Ramirez-Lopez, L., Robertson, J., Sakai, H., Soriano-Disla, J.M., Shepherd, K.D., Stenberg, B.,Towett, E.K., Vargas R. and Wetterlind, J. (2015) Soil Spectroscopy: An Alternative to Wet Chemistry for Soil Monitoring. Advances in Agronomy, 132, 139-159. http://dx.doi.org/10.1016/bs.agron.2015.02.002
Viscarra, R.A, Cattle, S.R., Ortega, A. and Fouad, Y. (2009) In Situ Measurements of Soil Colour, Mineral Composition and Clay Content by Vis-NIR Spectroscopy. Geoderma, 150, 253-266. http://dx.doi.org/10.1016/j.geoderma.2009.01.025
McCarty, G.W., Reeves, J.B., Reeves, V.B., Follett, R.F. and Kimble, J.M. (2002) Mid-Infrared and Near-Infrared Diffuse Reflectance Spectroscopy for Soil Carbon Measurement. Soil Science Society American Journal, 66, 640-646.
Viscarra Rossel, R.A., McGlynn, R.N. and McBratney, A.B. (2006) Determining the Composition of Mineral-Organic Mixes Using UV-vis-NIR Diffuse Reflectance Spectroscopy. Geoderma, 137, 70-82. http://dx.doi.org/10.1016/j.geoderma.2006.07.004
Clark, R.N. and Roush, L. (1984) Reflectance Spectroscopy Quantitative Analysis Techniques for Remote Sensing Applications. Journal of Geophysical Research, 89, 6329-6340. http://dx.doi.org/10.1029/JB089iB07p06329
Noomen, M.F., Skidmore, A.K., Van der Meer, F.D. and Herbert, H.H.T. (2006) Continuum Removed Band Depth Analysis for Detecting the Effects of Natural Gas, Methane and Ethane on Maize Reflectance. Remote sensing of Environment, 105, 262-270. http://dx.doi.org/10.1016/j.rse.2006.07.009
Zimmermann, M., Leifeld, J. and Fuhrer, J. (2007) Quantifying Soil Organic Carbon Fractions by Infrared-Spectroscopy. Soil Biology & Biochemistry, 39, 224-231. http://dx.doi.org/10.1016/j.soilbio.2006.07.010
Feyziyev, F., Babayev, M., Priori, S. and L’Abate, G. (2016) Using Visible-Near Infrared Spectroscopy to Predict Soil Properties of Mugan Plain, Azerbaijan. Open Journal of Soil Science, 6, 52-58. http://dx.doi.org/10.4236/ojss.2016.63006
Tenenhaus, M. (1998) La régression PLS, théorie et pratique. Editions Technip, Paris.
Mevik, B.H. and Wherens, R. (2007) The Pls Package: Principal Component and Partial least Squares Regression in R. Journal of Statistical Software, 18, 1-24. http://dx.doi.org/10.18637/jss.v018.i02
Aichi, H., Fouad, Y., Walter, C., Viscarra, R.A.R., Chabaane, Z.L. and Sanaa, M. (2009) Regional Prediction of Soil Carbon Content from Spectral Reflectance Measurements. Biosystems Engineering, 104, 442-446. http://dx.doi.org/10.1016/j.biosystemseng.2009.08.002
Chen, F., Kissel, D.E., West, L.T., Adkins, W. and Luvall, D.R. (2008) Mapping Soil Organic Carbon Concentration for Multiple Fields with Image Similarity Analysis. Soil Science Society American Journal, 72, 186-193. http://dx.doi.org/10.2136/sssaj2007.0028
Manlay, R.J., Feller, C. and Swift, M.J. (2007) Historical Evolution of Soil Organic Matter Concepts and Their Relationships with the Fertility and Sustainability of Cropping Systems. Agriculture, Ecosystems and Environment, 119, 217-233. http://dx.doi.org/10.1016/j.agee.2006.07.011
Elberling, B., Touré, A. and Rasmussen, K. (2003) Changes in Soil Organic Matter Following Groundnut-Millet Cropping at Three Locations in Semi-Arid Senegal, West Africa. Agriculture, Ecosystems and Environment, 96, 37-47. http://dx.doi.org/10.1016/S0167-8809(03)00010-0
Loum, M., Viaud, V., Fouad, Y., Nicolas, H. and Walter, C. (2014) Retrospective and Prospective Dynamics of Soil Carbon Sequestration in Sahelian agrosystems in Senegal. Journal of Arid Environments, 100-101, 100-105. http://dx.doi.org/10.1016/j.jaridenv.2013.10.007
Lufafa, A., Diédhiou, I., Samba, S.A.N., Séne, M., Khouma, M., Kizito, F., Dick, R.P., Dossa, E. and Noller, J.S. (2008) Carbon Stocks and Patterns Native Shrub Communities of Senegal’s Peanut Basin. Geoderma, 146, 75-82. http://dx.doi.org/10.1016/j.geoderma.2008.05.024
Manlay, R.J., Feller, C. and Swift, M.J. (2007) Historical Evolution of Soil Organic Matter Concepts and Their Relationships with the Fertility and Sustainability of Cropping Systems. Agriculture, Ecosystems and Environment, 119, 217-233. http://dx.doi.org/10.1016/j.agee.2006.07.011
Masse, D. (2007) Changements d’usage des terres dans les agrosystèmes d’Afrique subsaharienne. Propriétés des sols et dynamique des matières organiques. HDR, Ecole Nationale Supérieure Agronomique de Toulouse, , France, 82 p.
Ndour, N.Y.B., Fardoux, J. and Chotte, J.L. (2000) Statut Organique et microbiologique de sols ferrugineux tropicaux en jachère naturelle. In: Pontanier, R. and Floret, C., Eds., La jachère en Afrique tropicale, IRD, John Libbey Eurotext, Paris, 354-360.
Toure, A., Temgoua E., Guenat C. and Elberling, B. (2013) Land Use and Soil Texture Effects on Organic Carbon Change in Dryland Soils, Senegal. Open Journal of Soil Science, 3, 253-262. http://dx.doi.org/10.4236/ojss.2013.36030
Tschakert, P., Khouma, M. and Sene, M. (2004) Biophysical Potential for Soil Carbon Sequestration in Agricultural Systems of the Old Peanut Basin of Senegal. Journal of Arid Environments, 59, 511-533. http://dx.doi.org/10.1016/j.jaridenv.2004.03.026
Viaud, V., Anger, D.A. and Walter, C. (2010) Toward Landscape-Scale Modeling of Soil Organic Matter Dynamics Agroecosystems. Soil Science Society of America Journal, 74, 1847-1860. http://dx.doi.org/10.2136/sssaj2009.0412